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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015868195.1_cds_XP_016433394.1_29556
CDS Infomation

[gene=LOC107759904] [db_xref=GeneID:107759904] [protein=putative transcription elongation factor SPT5 homolog 1] [frame=2] [exception=annotated by transcript or proteomic data] [protein_id=XP_016433394.1] [location=complement(join(3562..3807,4617..4717,5746..5889,5990..6107,6190..6244,6714..6783,6878..6972,7046..7094,7347..7505,7694..7790,7904..8047,8140..8292,8363..8411,8504..>8596))] [gbkey=CDS]
Sequence

GTATTTGCTGATAATGTTGTTGAGAGCTCTGAAGTAACATCTGGTCTCACTCGTATTGGG
GAATATGAGCTCCATGACCTTGTAATACTAGACAATAAGAGTTTTGGCGTGATTATACGT
GTAGACAGTGAAGCCTTCCAGGTCCTTAAGGGTGTACCTGATAGACCTGAGGTAGCACTT
GTTAGACTTAGAGAGATCAAAGGGAAAATTGAGAAGAAAGGGAATGCCCAAGATCGGTTT
AAGAACCAGTTAGCGGTGAAAGACGTGGTAAAAGTTCTCGAGGGTCCTTGCAAAGGAAAA
CAAGGTCCTGTAGAACACATCTTCAGAGGAATTGTTTTTATTTATGATCGCCATCACCTT
GAGCATGCTGGTTATATTTGTGCCAAAACTCAATCTTGTGTGTTGATTGGTGGCTCGCGG
GCAAATGGTGATCGAAATGGTAACCCCTTCTCATCAAGATTTGCGAATCTCAGAACTCCA
CCACGTGCTCCTCAATCTCCAACAAGATCTTTTAGAGGTGGCCCACCTATGAGCTATGGA
AGAGGGCATAGAGGTGGAAGAGGGCATGATGCTTTAGTTGGTGCAGATGTGAAAATTCGT
CTTGGGCCATTTAAAGGTTGTAAGGGGCGTGTTAAAGATATCAAAGGAACTTCAGTCCGT
GTTGAACTGGAAGCCCAGATGAAAGTTGTTACAGTTGATCGCAATCATATTGCGGATAAT
GTTAACGTGACAACACCATTCCGGGAACCATCTAGATATGGTTTGGGAAGTGAAACACCA
TCACATCCTTCAAGGACTCCACTCCACCCATTTATGACACCTATGAGAGATCCTGGAGCA
ACACCTATCCATGATGGTATGAGGACGCCAATGCGTGACAGAGCATGGAATCCAATGAGT
CCGCCTAGGGATGATTGGGAAGAAGGAAACCCTGCTTCCTGGGGGTCAAGTCCGCAATAT
CAGCCATCTAGCCCTCGTTCAAGGGCTTATGAAGCACCTACTCCTGGTTCTGGTTGGACC
AACACTCCCAGCGGTAATTACAGTGATGCTGGGACCCCAAGAGACAATGGTTCTGCATAT
GCTAATGCTCCAAGTCCTTACTTGCCGTCAACTCCTGGTGGACAACCACCAATGACACCG
AGCTCAGCATATATACCTGGTACTCCAGGCGGGCAGCCAATGACTCCTGGAAGTGGTGGG
CTGGATATGATGTCACCTGTAGGAGGTGGGGATACTGAAGGTCCTTGGCTCTTGCCTGAT
ATCTTGGTCAATGTACGGAAGTCCAATGATGATACTGTCACTGGAGTTGTCCATGACGTG
CTAGCGGATGGTTCTTGTAGCGTTGGTCTTGGATCGAGCGGCAATGGTGACACTATCATT
GTACACCCAACTGAAATTGAGATAGTTGTACCAAAAAAGTCGGATAAGATCAAGATCATG
GGTGGTCCCCAACGTGGTGCCACTGGTAAGCTTATTGGTGTTGATGGCACTGACGGGATT
GTAAAGGTTGATGATACTCTTGATGTTAAAATTTTAGACATGGTACTTTTGGCGAAGTTA
GCGCATGCATAG

Peptide Sequence

PEP ID

XP_016433394.1
PEP Infomation

PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Nicotiana tabacum]
Sequence

MPRQRDYDDDDVEPEEEEEDVYEEEDEEEEEEDDHRGKSGRKRRRSDFIDDVAEEDDDEE
EDDDDEDYGGGGGGGRRRPKRRTGSEFFDLEAAVDSDEDEEEEEGEDDFIVDGGAEIPDE
DGARREYRHRMLPHDDQEEDLEELTRSIQQRYARSAHVEYDEEATDVEQQALLPSVRDPK
LWIVKCGIGHEREVAVCLMQKAIDRGSELQIRSVVALDHLQGYIYIEADKEAHVREACKG
MRSIYAQKVTLVPIKEMTDVLSVESKAVDLTRDTWVRMKTGTYKGDLAKVVDVYYDTQRV
TVKLIPRIDLQALSNKMEGREVQKKKAFIPPPRFMNIDEAREMNIRVERKRHQSGDYFEN
IGGMLFKDGFLYKTVAMKSISTMNVQPSFDELEKFRQPGEGGDGDMASLSTLFSNRKKGH
FMKGDRVIVVKGDLKNLKGCVEKVEENTVHIRPSVKDLQDTLAVSDRELCKYFEPGNHVK
VISGSSEGATGMVVSVEGHVVNLVSDTTKELLRVFADNVVESSEVTSGLTRIGEYELHDL
VILDNKSFGVIIRVDSEAFQVLKGVPDRPEVALVRLREIKGKIEKKGNAQDRFKNQLAVK
DVVKVLEGPCKGKQGPVEHIFRGIVFIYDRHHLEHAGYICAKTQSCVLIGGSRANGDRNG
NPFSSRFANLRTPPRAPQSPTRSFRGGPPMSYGRGHRGGRGHDALVGADVKIRLGPFKGC
KGRVKDIKGTSVRVELEAQMKVVTVDRNHIADNVNVTTPFREPSRYGLGSETPSHPSRTP
LHPFMTPMRDPGATPIHDGMRTPMRDRAWNPMSPPRDDWEEGNPASWGSSPQYQPSSPRS
RAYEAPTPGSGWTNTPSGNYSDAGTPRDNGSAYANAPSPYLPSTPGGQPPMTPSSAYIPG
TPGGQPMTPGSGGLDMMSPVGGGDTEGPWLLPDILVNVRKSNDDTVTGVVHDVLADGSCS
VGLGSSGNGDTIIVHPTEIEIVVPKKSDKIKIMGGPQRGATGKLIGVDGTDGIVKVDDTL
DVKILDMVLLAKLAHA

Transcript Sequence

Gene sequence data has not been registered.